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Failed To Execute Command: Try Specifying Your Dssp Version With The -ver Option.

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Please tell me in detail and step wise, Then only i can find your error step. My AccountSearchMapsYouTubePlayGmailDriveCalendarGoogle+TranslatePhotosMoreDocsBloggerContactsHangoutsEven more from GoogleSign inHidden fieldsSearch for groups or messages ⚲ Project General Profile Sign inRegister HomeProjectsHelp Search: GROMACS OverviewActivityRoadmapIssuesWikiRepository Issues View all issues Summary Bug #1675 DSSP fatal error ADD COMMENT • link written 22 months ago by BI • 60 Please log in to add an answer. Lemkul Re: [gmx-users] DSSP error Ali Naqvi Re: [gmx-users] DSSP error ahmet yıldırım Re: [gmx-users] DSSP error Justin A. http://ermcenter.com/failed-to/slim-failed-to-execute-login-command-arch.html

Simetimes >>>>>> >>>>>>> I've obtain error like >>>>>>> >>>>>>> >>>>>>> There are 286 residues in your selected group >>>>>>> dssp cmd='/usr/local/bin/dssp -i dd42GVbd -o ddpu8ln2 > /dev/null 2> >>>>>>> /dev/null' >>>>>>> Error: Dssp With Biopython Hello, I am trying to run DSSP with Biopython. History #1 Updated by Justin Lemkul almost 2 years ago Status changed from New to Rejected Please report usage questions and problems to the gmx-users mailing list. import misopy and import pysplicing ... https://www.researchgate.net/post/How_to_do_do_dssp_in_Gromacs45

Failed To Execute Command: Try Specifying Your Dssp Version With The -ver Option.

Either your environment variable is wrong, the binary is incompatible with your hardware, or executable permissions are not set. Jan 21, 2013 Budheswar Dehury · RMRC Bhubaneswar Dear Om could please let me know the steps which you have followed to install DSSP for GROMACS in Linux? However, I am constantly getting this error. All went well.

Use the www >> interface or send it to [email protected] >> . >> Can't post? What is a non-vulgar synonym for this swear word meaning "an enormous amount"? But unfortunately I encountered a... Dssp Executable (/usr/local/bin/dssp) Does Not Exist (use Setenv Dssp) Read http://www.gromacs.org/Support/Mailing_Lists >> >> >> >> >> -- Ahmet YILDIRIM >> >> >> -- ======================================== >> >> Justin A.

Read http://www.gromacs.org/**Support/Mailing_Lists >> > > -- > gmx-users mailing list gmx-users at gromacs.org > http://lists.gromacs.org/**mailman/listinfo/gmx-users > * Please search the archive at http://www.gromacs.org/** > Support/Mailing_Lists/Searchbefore posting! > * Please don't post Dssp Download Sep 24, 2013 Jayanthi Jayakumar · Anna University, Chennai Fisrt i got the DSSP exe by giving sudo wget ftp://ftp.cmbi.ru.ml/pub/software/dssp/dssp-2.0.4-linux-i386 -o /usr/local/bin/dssp sudo chmod a+x /usr/local/bin/dssp then checked whether dssp is FrameDP installation issue Has anyone ever encountered issues installing FrameDP on a local computer? https://www.biostars.org/p/130681/ When I am running these commands: export DSSP=/usr/local/bin/dssp do_dssp -s md_0_1.tpr -f md_0_1_noPBC.xtc -o dssp.xvg -ver 2 I am getting this error: dssp cmd='/usr/local/bin/dssp -na dd31ZWbc ddI6at3a > /dev/null 2> /dev/null'

Still > > dssp in the path is probably not sufficient. Setenv Command Not Found I freshly downloaded the dsspcmbi executable and rename it to dssp and gave executable file permission and it started working. Can't post? Hacker used picture upload to get PHP code into my site Word for unproportional punishment?

Dssp Download

See http://www.gromacs.org/Documentation/Gromacs_Utilities/do_dssp > I already seen this page and the dssp executable file is present in the specified location. https://groups.google.com/d/topic/archive-gmx-users/9KEx0MJEzpU First of all i downloaded the dssp-2.0.4-linux-i386 file from ftp://ftp.cmbi.ru.nl/pub/software/dssp/ and saved in the location of usr/local/bin directory 2. Failed To Execute Command: Try Specifying Your Dssp Version With The -ver Option. Dear all, I am trying to install "rJava" into R but getting following errors. Dssp Download For Gromacs Can't post?

The command in the > terminal would be what I quoted before. > > Do a test: can you run the dssp executable on a .pdb file? this contact form I even tried to perform on different computer build, resulting into the same error but at different timesteps. Please help Sep 23, 2013 Om Prakash Sharma · Excelra Knowledge Solutions Dear Jayanthi Jayakumar, You are getting this error message because dssp is not able to execute the dssp application. Lemkul > > > ahmet yıldırım wrote: > >> Dear Justin, I don't undertand you said "you haven't chmod +x dssp)?" >> Please look at attached photo? >> >> > How To Install Dssp

Read http://www.gromacs.org/****Support/Mailing_Lists >>>>>> >>>>>> > >>>>>> >>>>>> -- >>>>> gmx-users mailing list gmx-users at gromacs.org >>>>> http://lists.gromacs.org/****mailman/listinfo/gmx-users >>>>> >>>>> > >>>>> >>>>> * Please search the archive at >>>>> Error installing miso Hello,        I used pip to install misopy. Is the... have a peek here I have installed biopython 1.59 with python 2.7.2...

PASA: Error during sample run Dear All I running PASA on sample data with following command. Nov 8, 2012 Om Prakash Sharma · Excelra Knowledge Solutions Yes i have done..Thank you all for your valuable suggestions. Done blablabla The following extra packages will be installed: libboost-iostreams1.54.0 libboost-program-options1.54.0 libboost-system1.54.0 libboost-thread1.54.0 The following NEW packages will be installed: dssp libboost-iostreams1.54.0 libboost-program-options1.54.0 libboost-system1.54.0 libboost-thread1.54.0 0 upgraded, 5 newly installed, 0

Apr 19, 2013 Jayanthi Jayakumar · Anna University, Chennai Source code file: /build/buildd/gromacs-4.5.5/src/tools/do_dssp.c, line: 572 Fatal error: Failed to execute command: /usr/local/bin/dssp -na ddGeRvDR ddjJlxVr > /dev/null 2> /dev/null I followed

Use the www interface or send it to [email protected] Fastq-dump crashing with core dump? Lemkul Re: [gmx-users] DSSP error Justin A. RNAseq Tophat crashes Hello everyone, I have encountered the following errors and it has puzzled me for more than a wee...

Read http://www.gromacs.org/Support/Mailing_Lists Previous message View by thread View by date Next message [gmx-users] do_dssp failed to execute Sunita Patel Re: [gmx-users] do_dssp failed to execute Mark Abraham Re: [gmx-users] do_dssp failed Topics Structural Bioinformatics × 251 Questions 2,118 Followers Follow Bioinformatics × 1,966 Questions 101,532 Followers Follow Computational Biophysics × 211 Questions 1,814 Followers Follow Computer Science × 1,381 Questions 129,847 Followers Read http://www.gromacs.org/Support/Mailing_Lists Dr. http://ermcenter.com/failed-to/failed-to-build-vmnet-failed-to-execute-the-build-command-ubuntu.html asked 4 years ago viewed 1236 times active 2 years ago Linked 1 How to install dssp (secondary structure assignments) under 12.04?

How to deal with an intern's lack of basic skills? OS= centOS; R vers... But when i am giving comand $dssp.exe -h it is running and asking any key to continue...Please suggest. I just couldn't remember if the dssp > executable was, by default, capable of being executed.

Cheers!! Lemkul > Ph.D. Problem installing FastME for OrthoFinder Hi, I am trying to install OrthoFinder 1.0.7. I believe this issue had been fixed in GROMACS 4.6.

Join them; it only takes a minute: Sign up Here's how it works: Anybody can ask a question Anybody can answer The best answers are voted up and rise to the I have installed ... I surprise why it was not working before. Install Homebrew package with all available options Where is the barding trick?

Got a question you need answered quickly? You don't need to specify the path, because /usr/local/bin is already accounted for. Link-only answers can become invalid if the linked page changes. –muru Aug 15 '14 at 22:03 add a comment| up vote 0 down vote Just updating a little bit. Nov 8, 2012 Ricardo J Ferreira · University of Lisbon So, you have to rename 'dssp.exe' to 'dssp' because GROMACS detects by default the command 'dssp'.

ADD COMMENT • link modified 22 months ago • written 22 months ago by ballisticws • 20 0 22 months ago by BI • 60 India BI • 60 wrote: Thank